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database for annotation, visualization and integrated discovery (david)  (David Sherman)

 
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    David Sherman database for annotation, visualization and integrated discovery (david)
    Database For Annotation, Visualization And Integrated Discovery (David), supplied by David Sherman, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/the+database+for+annotation%2C+visualization+and+integrated+discovery+(david)/database+for+annotation++visualization+and+integrated+discovery/pmc12018166-87-10-12
    Average 90 stars, based on 1 article reviews
    database for annotation, visualization and integrated discovery (david) - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Identifying hub genes and key functional modules in leaf tissue of Populus species based on WGCNA.
    Article Snippet: 2022), P. tomentosa (An et al. 2022; Li et al. 2024).. With the fast development of omics and biology techniques, the accumulation of tremendous data and resources will highly facilitate the improvement of functional genomics in poplar, pan-genome analysis, and comparative genomics of tree species.. Systems biology of the post-genomic era is to interpret the huge data at the system level by utilizing biological networks, in which nodes correspond to biological components including genes, RNA, proteins, and metabolites; links between nodes represent the relationship of biological components.

    Article Title: Extracellular Vesicles Derived From Regenerating Tissue Promote Stem Cell Proliferation in the Planarian Schmidtea mediterranea
    Article Snippet: The Database for Annotation, Visualization and Integrated Discovery (DAVID) (Sherman et al. ) ( https://david.ncifcrf.gov/ ) was used to annotate differentially expressed (DE) planarian transcripts with putative biological process and function terms.

    Article Title: Whole Genome Sequencing Reveals Clade‐Specific Genetic Variation in Blacklegged Ticks
    Article Snippet: Gene ontology (GO) analysis was performed using the Database for Annotation, Visualization, and Integrated Discovery v2023q4 (DAVID) (Sherman et al. ; Huang et al. ).

    Article Title: Integrated pharmacoanalysis, bioinformatics analysis, and experimental validation to identify the ingredients and mechanisms of Xiao-Luo-Wan in uterine fibroids treatment
    Article Snippet: Finally, Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of the overlapping gene targets were performed with the Database for Annotation, Visualization and Integrated Discovery (DAVID) (Sherman et al. ), and the results were visualized with Cytoscape, Bioinformatics ( https://www.bioinformatics.com.cn ), and the GGPLOT2 package in R software (version 3.6.3).

    Article Title: Yersinia pestis Actively Inhibits the Production of Extracellular Vesicles by Human Neutrophils
    Article Snippet: Subsequent pathway analysis was performed using the Database for Annotation, Visualization and Integrated Discovery (DAVID) (Sherman et al. ).

    Article Title: Biochemical and neurophysiological effects of deficiency of the mitochondrial import protein TIMM50
    Article Snippet: Go- term analysis was performed using the database for annotation, visualization, and integrated discovery (DAVID) (Sherman et al., 2022).

    Article Title: CRISPRi-based screens in iAssembloids to elucidate neuron-glia interactions.
    Article Snippet: 07.014 The Database for Annotation, Visualization and Integrated Discovery (DAVID) Sherman et al.79 https://davidbioinformatics.nih.gov/ summary.jsp Graphpad Prism v7 Dotmatics https://www.graphpad.com; RRID:SCR_002798

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    Article Title: Integrated pharmacoanalysis, bioinformatics analysis, and experimental validation to identify the ingredients and mechanisms of Xiao-Luo-Wan in uterine fibroids treatment.
    Article Snippet: The links between putative targets of XLW drug-containing serum and therapeutic UF targets were subsequently identified to establish interaction networks via the STRING database (Szklarczyk et al. 2023) and visualized in Cytoscape (version 3.10.2) (Shannon et al. 2003). .. Finally, Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of the overlapping gene targets were performed with the Database for Annotation, Visualization and Integrated Discovery (DAVID) (Sherman et al. 2022), and the results were visualized with Cytoscape, Bioinformatics (https://www.bioinformatics.com.cn), and the GGPLOT2 package in R software (version 3.6.3). .. The Ligplot V, AutoDock and PyMOL were used for molecular docking and visualization to evaluate the binding affinity of the XLW components and predicted targets.



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